Labs

R Labs

• Lab 1 : Overview & Getting Started
• Lab 2 : Learning R with the Help of AI tools Starting with Graphing using ggplot
• Lab 3 : Data Transformation with dplyr
• Lab 4 : Coding Basics, Style and Data Read/Write
• Lab 5 : Working with NEON Metagenome Assembled Genomes (MAGs / bins)
• Lab 6 : ggplotting with NEON MAG data
• Lab 7 : Data Tidying, Transformation and Visualization with COVID-19 reporting data
• Lab 8: Genome representations
• Lab 9 : Phylogenetic tree visualization using ggtree
• Lab 10 : Read abundance - normalization and statistics

Unity Labs

• Lab : Running bioinformatics software on Unity (Blast, Read mapping)

Sharing and Publishing

• Lab S1 : Quarto
• Lab S2 : Adding References to Your Report with Zotero
• Lab : Connecting a Github repo site with a RStudio project
• Lab : Quarto Manuscripts
• Lab : Building a 5 tab web site with Quarto
• Lab : R Shiny

Manuscript

• PathoGen manuscript : Deadline Dec 10