Human Genome Analysis Spring 2024
This is a rendering of hmtl files from the course repository for Human Genome Analysis taught at the University of Massachusetts Amherst by Prof. Jeffrey Blanchard. If you are not using RStudio (Posit) Cloud here are directions for creating a RStudio project space that will sync with and download files from the course repo.
Introduction to R and Tidyverse
- Lab 1 : Introduction to R and Reproducible Research
- Lab 2 : Data Visualization with ggplot
- Lab 3 : Data Transformation with dplyr
- Lab 5 : Data Transformation and Visualization with COVID-19 Reporting Data
- Lab 8 : Data Tidying and Transformation with Table Joins
Genetic testing, SNPs and GWAS
- Lab 4 : Data Transformation and Visualization with 23andMe data
- Lab 6 : Organizing DTC Genetic Testing Reports and Finding your Genealogical Ancestors
- Lab 7 : How Many Genetic Ancestors Do I Have?”
- Lab 9 : Data Transformation and Visualization with GWASCAT mappings I
- Lab 10 : Data Transformation and Visualization with GWASCAT mappings II
Gene Expression Analysis
Special labs for graduates students in 678